| Strain | Technology | Size | Accesion GI | Comments
Extra information | GROUP |
| 10.1 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 10.58 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 10157 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 11.17 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 11.31 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 11101 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 11185 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 11190 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 12.24 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 12.76 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 13.31 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 13.42 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 13.65 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 3A.12 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 3A.21 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 3A.24 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 3A.30 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 3A.33 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 3B.44 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 3B.49 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 4.10 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 5.24 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 5.54 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 5.61 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 6.40 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 6.90 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 6154 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 6190 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 6200 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 7.1 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 7.44 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 7.51 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 7.7 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 7109 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 8.13 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 8.69 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 9.12 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 9.20 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 9.31 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 9109 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| 9112 | Illumina-HiSeq | - | - | Isolate directly from soil | UPM |
| Alteromonas Mac_S2_MA12%_AC16 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Alteromonas Mac_S2_MA12%_AC21 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Alteromonas Mac_S2_MA12%_AC23 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Alteromonas Mac_S2_MA12%_AC24 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Alteromonas Mac_S2_MA12%_AC4 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Alteromonas Mac_S2_MA12%_AC6 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Alteromonas macleodii UM4b | Illumina-HiSeq2000 | 4,407,104 | CP004855 | | UMH |
| Alteromonas macleodii 615 | Illumina-HiSeq2000 | 4,389,661 | CP004846 | | UMH |
| Alteromonas macleodii 673 | 454+HiSeq2000 | 4,602,068 | CP003844 | | UMH |
| Alteromonas macleodii AD45 | 454+HiSeq2000 | 4,628,907 | CP003873 | | UMH |
| Alteromonas macleodii AltATCC | 454+HiSeq2000 | 4,607,844 | CP003841 | | UMH |
| Alteromonas macleodii AltDE | 454+HiSeq2000 | 4,480,937 | CP001103 | | UMH |
| Alteromonas macleodii AltDE1 | 454+HiSeq2000 | 4,643,844 | CP003917 | | UMH |
| Alteromonas macleodii Am170 | Illumina-HiSeq2000 | 4,505,246 | | DRAFT | UMH |
| Alteromonas macleodii BS11 | 454+HiSeq2000 | 4,480,507 | CP003845 | | UMH |
| Alteromonas macleodii BS7 | Illumina-HiSeq2000 | 4478974 | | DRAFT | UMH |
| Alteromonas macleodii BS8 | Illumina-HiSeq2000 | 4433518 | | DRAFT | UMH |
| Alteromonas macleodii D7 | Illumina-HiSeq2000 | 4,380,082 | | DRAFT | UMH |
| Alteromonas macleodii H84 | Illumina-HiSeq2000 | 4480841 | | DRAFT | UMH |
| Alteromonas macleodii H94 | Illumina-HiSeq2000 | 4482874 | | DRAFT | UMH |
| Alteromonas macleodii MED64 | Illumina-HiSeq2000 | 4,397,537 | CP004848 | | UMH |
| Alteromonas macleodii U10 | Illumina-HiSeq2000 | - | | Sequencing | UMH |
| Alteromonas macleodii U4 | Illumina-HiSeq2000 | 4,487,701 | CP004849 | | UMH |
| Alteromonas macleodii U7 | Illumina-HiSeq2000 | 4,442,936 | CP004851 | | UMH |
| Alteromonas macleodii U8/U12 | Illumina-HiSeq2000 | 4,395,035 | CP004852 | | UMH |
| Alteromonas macleodii UM7/UM8 | Illumina-HiSeq2000 | 4,628,423 | CP004853 | | UMH |
| Brevibacillus sp. strain 10 | 454 | 5.5 Mb | | DRAFT | UGR |
| Brevibacillus sp. strain 10 | Illumina | 5.5 Mb | | Being sequenced | UGR |
| Cyanobacteria isolated from Rio Tinto | Illumina | ±7 Mb | | Being sequenced | UGR |
| Fervidobacterium thailandensis strain 2004 | 454+Illumina | 2.0 Mb | | Being sequenced | UGR |
| G10 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G108 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G109 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G16 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G28 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G4 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G51 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G51 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G67 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G67 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G7 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G73 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G73 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G77 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G77 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G8 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G83 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G88 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G93 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G94 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| G99 | Illumina-HiSeq | - | - | Isolate from pea nodules | UPM |
| H11 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H117 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H12 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H127 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H130 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H132 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H139 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H174 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H178 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H31 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H5 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| H82 | Illumina-HiSeq | - | - | Isolate from fava-bean nodules | UPM |
| Halonotius pterides | Illumina-HiSeq2000 | - | | Sequencing | UMH |
| Halorubrum spp. | Illumina-HiSeq2000 | - | | Sequencing | UMH |
| Illumatobacter fluminis | Illumina-HiSeq2000 | - | | Sequencing | UMH |
| L102 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L104 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L106 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L111 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L117 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L70 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L74 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L79 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L8 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L82 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L9 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| L99 | Illumina-HiSeq | - | - | Isolate from lentil nodules | UPM |
| Mac_S1_E_SW_E3_ab1 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Mac_S1_E_SW_E3_ab2 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Mac_S1_E_SW_E4_ab1 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Mac_S1_E_SW_E4_ab2 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Mac_S1_E_SW_ET1 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Mac_S1_E_SW_ET2 | Illumina-HiSeq2000 | | | DRAFT | UMH |
| Oceanobacillus spp. | Illumina MiSeq, pair-end, 250bp | 3.6 Mbp | | Sequencing | UPV/EHU |
| Pseudomonas stutzeri 123 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 125 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 130 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 136 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 137 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 145 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 146 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 147 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 161 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri 163 ST | | | | Sequencing | UIB |
| Pseudomonas stutzeri I24 | | | | Sequencing | UIB |
| Pseudomonas stutzeri R10 | | | | Sequencing | UIB |
| Salmonella enterica 4,5,12:i:- monophasic strain 1536 | Illumina MiSeq, pair-end, 250bp | 4.80 Mbp | | Sequencing | UGR |
| Salmonella enterica 4,5,12:i:- monophasic strain 1566 | Illumina MiSeq, pair-end, 250bp | 4.86 Mbp | | Sequencing | UGR |
| Salmonella enterica 4,5,12:i:- monophasic strain 2054 | Illumina MiSeq, pair-end, 250bp | 4.71 Mbp | | Sequencing | UGR |
| Sinorhizobium melilotistrain AK21 | 454-FLX Titanium | ¿? | - | ON GOING
Sequencing was performed on a GS FLX Titanium platform (Roche Diagnostics) at MACROGEN Inc. (Korea) on the basis of both, shotgun and 3 Kb paired-end libraries | EEZ-CSIC |
| Sinorhizobium melilotistrain GR4 | 454-FLX Titanium | 7.14 Mb | CP003933
CP003934
CP003935
CP003936
CP003937 | Martínez-Abarca F, et al.Genome Announc. 2013 doi:pii: e00174-12.
Complete sequence of the five replicons. Sequencing was performed on a GS FLX Titanium platform (Roche Diagnostics) at MACROGEN Inc. (Korea) on the basis of both, shotgun and 3 Kb paired-end libraries | EEZ-CSIC |
| Sinorhizobium melilotistrain RMO17 | 454-FLX Titanium | ¿? | - | ON GOING
Sequencing was performed on a GS FLX Titanium platform (Roche Diagnostics) at MACROGEN Inc. (Korea) on the basis of both, shotgun and 3 Kb paired-end libraries | EEZ-CSIC |
| Spiribacter salinus | Illumina-HiSeq2000 | 2.7 Mb | - | Close | UMH |
| Sthaphylococcus aureus human strains ST121 (8 strains) | 454 + pair end | 2,7 Mb(each one) | | draft | UGR |
| Sthaphylococcus aureus human strains ST121 (8 strains) | 454 | 2,7 Mb(each one) | | draft | UGR |
| Sthaphylococcus aureus ovine adaptation experiement (110 strains) | 454 | 2,7 Mb (each strain) | | sequencing | UGR |
| Sthaphylococcus aureus rabbit strain ST121 | 454 | 2,7 Mb | | close | UGR |
| Sthaphylococcus aureus rabbit strains ST121 (3 strains) | 454 + pair end | 2,7 Mb(each one) | | draft | UGR |
| Sthaphylococcus aureus rabbit strains ST121 (3 strains) | 454 | 2,7 Mb(each one) | | draft | UGR |
| Streptococcus dentisani 7746 | 454 shot-gun and pair ends | 2.3 Mbp | - | Patented strain, new species | CSISP |
| Streptococcus dentisani 7747 | 454 shot-gun and pair ends | 2.3 Mbp | - | Patented strain, new species | CSISP |
| Ureibacillus sp. strain 12 | 454 | 6.4 Mb | | DRAFT | UGR |
| Ureibacillus sp. strain 12 | Illumina | 6.4 Mb | | DRAFT | UGR |
| V10 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V100 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V116 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V14 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V2 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V30 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V4 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V43 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V50 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V51 | Illumina-HiSeq | - | - | Isolate from vetch nodules | UPM |
| V57 | Illumina-HiSeq | - | - | UMH |
| Description | Habitat | Technology | Size | Accesion GI | Comments
Extra information | GROUP |
| 16S rDNA Amplicons | Mamillaria carnea rhizosphere | 454-FLX | 28000 reads of 405 nt | European Read Archive (Accs nr: ERP000672) | Torres-Cortes et al. 2012 Plant and Soil 357: 275-288. 2012. | EEZ-CSIC |
| DCM fosmids | 6000 fosmids from the Deep chlorophyll maximum in the Mediterranean | Illumina | 2 Illumina lanes, ~80GB total | | | UGR |
| DCM-0.1um filtrate metagenome | Metagenome of Mediterranean DCM | 454 | 11MB | | | UGR |
| DCM-Aug29 | Metagenome of Mediterranean DCM | Illumina | 5GB | | | UGR |
| DCM-Jul20 | Metagenome of Mediterranean DCM | Illumina | 5GB | | | UGR |
| DCM-virome | Metavirome of Mediterranean DCM | Illumina | 16GB | | | UGR |
| Dental Caries Metatranscriptome | Enamel and dental caries lesions | Illumina 100 bp single-ends | 16 Gbp | | | UGR |
| Metagenome | Cavities (enamel and dentin caries) | 454 Titanium | 200 Mbp | NCBI Sequence Read Archive under accession numbers 4447970.3 4447971.3 4450726.3. | Published Caries Research 2013 | CSISP |
| Metagenome | Chimpanzee’s dental plaque | 454 Titanium | 250 Mbp | Pending | -- | CSISP |
| Metagenome | Dental plaque | 454 Titanium | 1 Gbp | MG-RAST server “Oral Microbiome” project | Published ISME J 2012 | CSISP |
| Metagenome: rhizosphere of burned holm-oaks | Mediterranean Forest at Sierra Nevada National Park | 454 GS FLX Titanium | 80 Mbp | MG-RAST server: 4465558.3 | Submitted to Environmental Microbiology | EEZ-CSIC |
| Metagenome: rhizosphere of wild holm-oaks | MediterraneanForest at Sierra Nevada National Park | 454 GS FLX Titanium | 160 Mbp | MG-RAST server: 4465556.3 | Submitted to Environmental Microbiology | EEZ-CSIC |
| Metatranscriptome | Human Dental plaque before and after a meal | 454 Titanium | 100 Mbp | MG-RAST server, “Oral Metatranscriptome” project, id 935 | Benitez-Paez et al. 2014, BMC Genomics | CSISP |
| Metatranscriptome | Human Oral Biofilm through time | Illumina 50 bp single ends | 16 Gbp | MG-RAST server, “Oral Metatranscriptome” project, id 935 | Benitez-Paez et al. 2014, BMC Genomics | CSISP |
| PoolSeq of fava-bean plants | Nodules of fava-bean plants | Illumina-HiSeq | 5,6 Gb | - | Pool of a hundred isolates | UPM |
| PoolSeq of pea Isolates | Nodules of pea plants | Illumina-HiSeq | 5,4 Gb | - | Pool of a hundred isolates | UPM |
| PoolSeq of soil isolates | Isolates directly from soil | Illumina-HiSeq | 4,8 Gb | - | Pool of a hundred and nineteen isolates | UPM |
| PoolSeq of vetch plants | Nodules of vetch plants | Illumina-HiSeq | 5,4 Gb | - | Pool of a hundred isolates | UPM |
| Poolseq of lentil plasnt | Nodules of lentil plants | Illumina-HiSeq | 5,6 Gb | - | Pool of a hundred isolates | UPM |
| SS32 | Solar salter crystallizer pond of 32% salinity (Winter simple) | 454 | 176 MB | | | UGR |
| SS37 | Solar saltern crystallizer pond of 37% salinity (summer sample) | 454 | 309 MB | SRP007685 | | UGR |
| SS37-illumina | Solar saltern crystallizer pond of 37% salinity (summer sample) | Illumina | 6 GB | | | UGR |
| Salburua wetland 2013/04/17 | Fresh water, 1 meter deep | Illumina HiSeq | 12.8 Gb | - | | UPV/EHU |
| Salburua wetland 2013/04/23 | Fresh water, 1 meter deep | Illumina-HiSeq | 8.3 Gb | - | | UPV/EHU |
| Salburua wetland 2013/05/06 | Fresh water, 1 meter deep | Illumina-HiSeq | 12.7 Gb | - | | UPV/EHU |
| Salburua wetland 2013/05/22 | Fresh water, 1 meter deep | Illumina-HiSeq | 6.3 Gb | - | | UPV/EHU |
| Salburua wetland 2013/06/03 | Fresh water, 1 meter deep | Illumina-HiSeq | 6.7 Gb | - | | UPV/EHU |
| Salburua wetland 2013/06/25 | Fresh water, 1 meter deep | Illumina-HiSeq | 9.5 Gb | - | | UPV/EHU |
| Salburua wetland 2013/07/08 | Fresh water, 1 meter deep | Illumina-HiSeq | 8.2 Gb | - | | UPV/EHU |
| Salburua wetland 2013/07/15 | Fresh water, 1 meter deep | Illumina-HiSeq | 11.7 Gb | - | | UPV/EHU |
| Solar saltern 0.1um filtrate | Metagenome of solar saltern 19% pond | 454 | 39MB | | | UGR |
| Thermophilic enrichments | Doñana National Park | 454.Shotgun sequencing (3 runs) | 1.5 Gb | | A total of 35 samples from different zones and at different dates (including Beach, dune, floodplain, sediment) | UGR |
| Thermophilic enrichments | Doñana National Park | Illumina | 6 Gb | | Three selected samples have been sequenced | UGR |
| Torrevieja time series | Torrevieja solar saltern time series (7 time points) | 454 | 112 MB | | Sequenced at EMBL, no mRNA enrichment | CSISP |
